Cell pair colocalization or avoidance — cell_pair_localization • spacedeconv

Cell pair colocalization or avoidance

Usage

cell_pair_localization(
  spe,
  method = NULL,
  distance = 0,
  density = FALSE,
  cell_type_A = NULL,
  cell_type_B = NULL,
  niter = 100,
  presence_matrix = NULL,
  threshold = NULL,
  title = NULL
)

Arguments

spe: SpatialExperiment
method: presence method
distance: distance in spot diameter
density: density plot
cell_type_A: celltype 1
cell_type_B: celltype 2
niter: permutations
presence_matrix: presence matrix if available
threshold: threshold for custom presence determination
title: adjust title of density plot

Value

presence/absence for each cell type